Launch ShowcaseWin a Polaris merch box when you upload a dataset or benchmark! Learn more.

Dataset

polaris/kinase-pkis1-1

A subset of PKIS dataset only including EGFR, RET, KIT kinases. PKIS is a data set of 367 small-molecule ATP-competitive kinase inhibitors that was screened by the set in activity assays with 224 recombinant kinases and 24 G protein-coupled receptors and in cellular assays of cancer cell proliferation and angiogenesis.

Created on: December 08, 2023Dataset size: 54 KBNumber of datapoints: 364
Public

Explore the dataset columns

KIT

Description: Percentage of inhibition on KIT with mutation L858R_mutantType: float64

AttributeValue
unit%
sourcePKIS1
targetKIT
mutationL858R_mutant
organismHuman
objectiveHigher value
concentration1uM

Details

README

molprop

Background:

Kinases play a crucial role in cellular signalling, making them important targets for drug development. Dysregulation of kinases is frequently implicated in diseases like cancer, inflammation, and neurodegenerative disorders. Therefore, targeting kinases with specific drugs has emerged as a crucial strategy in modern drug discovery. Kinase-related task includes inhibition prediction, selectivity prediction, or kinase-ligand binding affinity prediction. In the early release version of Polaris, benchmarks were established for kinases such as EGFR, KIT, and RET, along with their respective mutations, as well as for LOK and SLK.

Description of readout

  • Readouts:
    • EGFR, EGFR_(L858R_mutant), EGFR_(L861Q_mutant), EGFR_(T790M_mutant), EGFR_(T790M-L858R_mutant)
    • KIT, KIT_(D816V_mutant), KIT_(T6701_mutant), KIT_(V560G_mutant)
    • RET, RET_(V804L_mutant), RET_(Y791F_mutant)
    • LOK
  • Bioassay readout: Percentage of inhibition (%).
  • Optimization objective: Higher potency (higher %inhibition).

Data resource:

PKIS 1: A set of 364 unique small-molecule ATP-competitive kinase inhibitors that was screened by the set in activity assays with 224 recombinant kinases and 24 G protein-coupled receptors and in cellular assays of cancer cell proliferation and angiogenesis.

Reference: https://pubmed.ncbi.nlm.nih.gov/26501955

Data curation

To maintain consistency with other benchmarks in the Polaris Hub, a thorough data curation process is carried out to ensure the accuracy of molecular presentations.

The full curation and creation process is documented here.